Selected Publications

2026

Lingo JJ, Balas MM, Bashyam AM, Hosler GA, Squiers GT, Klein JC. Proteomics and single-cell transcriptomics identify LRP1 as a diagnostic biomarker for atypical fibroxanthoma and pleomorphic dermal sarcoma. bioRxiv. 2026 doi: 10.64898/2026.02.04.703892

2025

Klein JC, Alame A, Petric UB, Hosler GA. Collision tumors of atypical fibroxanthoma and pleomorphic dermal sarcoma with other cutaneous malignancies: A retrospective cohort analysis. J Am Acad Dermatol. 2025 Dec 17. [Epub ahead of print] PubMed PMID: 41419126

Lingo JJ, Balas MM, Scherer PE, Klein JC. The Role of COL6A3 in Tumorigenesis, Metastasis, Diagnosis, and Disease Management. Cancers (Basel). 2025. PMID: 41228242

Klein JC, Shahwan KT, Petric UB, et al. Impact of immunosuppression on cutaneous squamous cell carcinoma outcomes. Journal of the American Academy of Dermatology. 2025 Sep 18.

Klein JC, Wilky BA, Ford HL. Molecular Characterization of Atypical Fibroxanthoma and Pleomorphic Dermal Sarcoma. Cancers (Basel). 2025 May 27;17(11). PubMed PMID: 40507266

<=2024

Klein JC, Wang L, Strand D, Lastufka C, Hosler GA, Hon GC. Single-cell and spatial transcriptomics identify COL6A3 as a prognostic biomarker in undifferentiated pleomorphic sarcoma. Mol Cancer. 2024 Nov 15;23(1):257. PubMed PMID: 39548577

Klein JC, McKesey J, Srivastava D, Nijhawan RI. In transit metastases of cutaneous squamous cell carcinoma: A single institution case series. J Am Acad Dermatol. 2023 Apr;88(4):943-945. PubMed PMID: 36403751

Klein JC, Dominguez AR†. Cutaneous Angiosarcoma. JAMA Dermatology. 2023 Jan 18. doi:10.1001/jamadermatol.2022.5446.

Klein JC, Agarwal V, Inoue F, Keith A, Martin B, Kircher M, Ahituv N, Shendure J. A systematic evaluation of the design and context dependencies of massively parallel reporter assays. Nat Methods. 2020 Nov;17(11):1083-1091. PubMed PMID: 33046894

Klein JC*, Keith A*, Rice S, Shepherd C, Agarwal V, Loughlin J, Shendure J†. Functional testing of thousands of osteoarthritis-associated variants for regulatory activity. Nature Communications. 2019 Jun 4;10(1):2434.  >80 citations

Klein JC†, Keith A, Agarwal V, Durham T, Shendure J†. Functional characterization of enhancer evolution in the primate lineage. Genome Biology. 2018 Jul 25;19(1):99.

Klein JC, Lajoie MJ, Schwartz JJ, Strauch EM, Nelson J, Baker D, Shendure J†. Multiplex pairwise assembly of array-derived DNA oligonucleotides. Nucleic Acids Res. 2016 Mar 18;44(5):e43

All Publications

https://www.ncbi.nlm.nih.gov/myncbi/1jimds76heQA4/bibliography/public/